PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0344s0360.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 194aa    MW: 22047.8 Da    PI: 6.1544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0344s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM951.2e-2961261127
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.at 86 
                             lppGfrF P+d+elv ++L++k++  + + + +i+++d+y ++Pw+L+ k+ +  k++yf+s+r +        n++t++gyWk   
  SapurV1A.0344s0360.1.p   6 LPPGFRFCPSDQELVLHFLHRKAALLPSHPHVIIPDLDLYPYDPWQLEGKALSAGKQLYFYSRRTQ--------NKITSNGYWKpMA 84 
                             79*************************888678**************977777889******9854........77999*****534 PP

                     NAM  87 gk.dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                             g+ +++v++    +++ vg+k  + fy   + +g kt+Wvm+eyr
  SapurV1A.0344s0360.1.p  85 GRgEEPVVTGdhhGNKIVGMKSYFLFY---TADGIKTNWVMEEYR 126
                             44366777656767778**********...78899*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-373161IPR003441NAC domain
PROSITE profilePS5100536.1616162IPR003441NAC domain
PfamPF023656.5E-207126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASPNLPPGF RFCPSDQELV LHFLHRKAAL LPSHPHVIIP DLDLYPYDPW QLEGKALSAG  60
KQLYFYSRRT QNKITSNGYW KPMAGRGEEP VVTGDHHGNK IVGMKSYFLF YTADGIKTNW  120
VMEEYRQSEA CTSSSSTKSS KKTRDRQKQD HSKWVICRVY ERDSDEEDGG AELSCLDEVF  180
LSLDDLDEIS LPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-28516719173NAC domain-containing protein 19
3swm_B7e-28516719173NAC domain-containing protein 19
3swm_C7e-28516719173NAC domain-containing protein 19
3swm_D7e-28516719173NAC domain-containing protein 19
3swp_A7e-28516719173NAC domain-containing protein 19
3swp_B7e-28516719173NAC domain-containing protein 19
3swp_C7e-28516719173NAC domain-containing protein 19
3swp_D7e-28516719173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299679.11e-100hypothetical protein POPTR_0001s21440g
RefseqXP_011046125.11e-101PREDICTED: NAC transcription factor ONAC010-like isoform X2
SwissprotQ8GWK63e-70NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E4FJJ71e-102A0A0E4FJJ7_9R
STRINGPOPTR_0001s21440.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.16e-70xylem NAC domain 1